J3_3J5L_017

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

3J5L|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J5L_017 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0571

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J5L|1|A|G|297
3J5L|1|A|G|298
3J5L|1|A|A|299
3J5L|1|A|A|300
3J5L|1|A|G|301
*
3J5L|1|A|C|316
3J5L|1|A|G|317
3J5L|1|A|C|318
3J5L|1|A|G|319
3J5L|1|A|A|320
3J5L|1|A|U|321
3J5L|1|A|A|322
3J5L|1|A|C|323
3J5L|1|A|A|324
3J5L|1|A|G|325
*
3J5L|1|A|C|337
3J5L|1|A|G|338
3J5L|1|A|U|339
3J5L|1|A|A|340
3J5L|1|A|C|341

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24