J3_3J6B_002

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAG*CGAAC*GAUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J6B_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0825

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3J6B|1|A|A|607
3J6B|1|A|A|608
3J6B|1|A|G|609
*
3J6B|1|A|C|623
3J6B|1|A|G|624
3J6B|1|A|A|625
3J6B|1|A|A|626
3J6B|1|A|C|627
*
3J6B|1|A|G|651
3J6B|1|A|A|652
3J6B|1|A|U|653
3J6B|1|A|U|654

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

54S ribosomal protein RML2, mitochondrial