J3_3J71_007

3D structure

PDB id

3J71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCACGG*CUGAC*GGACAGUGCC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J71|1|5|G|3933
3J71|1|5|G|3934
3J71|1|5|C|3935
3J71|1|5|A|3936
3J71|1|5|C|3937
3J71|1|5|G|3938
3J71|1|5|G|3939
*
3J71|1|5|C|4074
3J71|1|5|U|4075
3J71|1|5|G|4076
3J71|1|5|A|4077
3J71|1|5|C|4078
*
3J71|1|5|G|4168
3J71|1|5|G|4169
3J71|1|5|A|4170
3J71|1|5|C|4171
3J71|1|5|A|4172
3J71|1|5|G|4173
3J71|1|5|U|4174
3J71|1|5|G|4175
3J71|1|5|C|4176
3J71|1|5|C|4177

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL12

Chain G

Ribosomal protein eL8

Chain N

Ribosomal protein eL15

Chain i

Ribosomal protein eL36