J3_3J71_009
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCCAAG*CCCAGCCCGUGGAC*GGUAGCGG
- Length
- 28 nucleotides
- Bulged bases
- 3J71|1|5|C|216, 3J71|1|5|C|217, 3J71|1|5|U|224, 3J71|1|5|C|245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J71|1|5|C|194
3J71|1|5|C|195
3J71|1|5|C|196
3J71|1|5|A|197
3J71|1|5|A|198
3J71|1|5|G|199
*
3J71|1|5|C|215
3J71|1|5|C|216
3J71|1|5|C|217
3J71|1|5|A|218
3J71|1|5|G|219
3J71|1|5|C|220
3J71|1|5|C|221
3J71|1|5|C|222
3J71|1|5|G|223
3J71|1|5|U|224
3J71|1|5|G|225
3J71|1|5|G|226
3J71|1|5|A|227
3J71|1|5|C|228
*
3J71|1|5|G|240
3J71|1|5|G|241
3J71|1|5|U|242
3J71|1|5|A|243
3J71|1|5|G|244
3J71|1|5|C|245
3J71|1|5|G|246
3J71|1|5|G|247
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Ribosomal protein uL4
- Chain Y
- Ribosomal protein uL24
Coloring options: