J3_3J71_010
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 3J71|1|5|U|354, 3J71|1|5|A|362, 3J71|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J71_010 not in the Motif Atlas
- Geometric match to J3_8CRE_004
- Geometric discrepancy: 0.1685
- The information below is about J3_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J71|1|5|C|351
3J71|1|5|G|352
3J71|1|5|A|353
3J71|1|5|U|354
3J71|1|5|A|355
3J71|1|5|G|356
3J71|1|5|U|357
3J71|1|5|C|358
3J71|1|5|A|359
3J71|1|5|A|360
3J71|1|5|C|361
3J71|1|5|A|362
3J71|1|5|A|363
3J71|1|5|G|364
3J71|1|5|U|365
3J71|1|5|A|366
3J71|1|5|C|367
*
3J71|1|5|G|374
3J71|1|5|G|375
3J71|1|5|A|376
3J71|1|5|A|377
3J71|1|5|A|378
3J71|1|5|G|379
*
3J71|1|8|C|21
3J71|1|8|U|22
3J71|1|8|C|23
3J71|1|8|G|24
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain Y
- Ribosomal protein uL24
- Chain j
- Ribosomal protein eL37
- Chain l
- Ribosomal protein eL39
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