J3_3J71_013
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCGCGACC*GAGGGAGCGAGACCCGUCGCCGCG*CGCACGGGGUCGGCGG
- Length
- 48 nucleotides
- Bulged bases
- 3J71|1|5|C|962, 3J71|1|5|G|965, 3J71|1|5|U|971, 3J71|1|5|G|1281, 3J71|1|5|G|1284, 3J71|1|5|G|1288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J71|1|5|C|706
3J71|1|5|C|707
3J71|1|5|G|708
3J71|1|5|C|709
3J71|1|5|G|710
3J71|1|5|A|711
3J71|1|5|C|712
3J71|1|5|C|713
*
3J71|1|5|G|955
3J71|1|5|A|956
3J71|1|5|G|957
3J71|1|5|G|958
3J71|1|5|G|959
3J71|1|5|A|960
3J71|1|5|G|961
3J71|1|5|C|962
3J71|1|5|G|963
3J71|1|5|A|964
3J71|1|5|G|965
3J71|1|5|A|966
3J71|1|5|C|967
3J71|1|5|C|968
3J71|1|5|C|969
3J71|1|5|G|970
3J71|1|5|U|971
3J71|1|5|C|972
3J71|1|5|G|973
3J71|1|5|C|974
3J71|1|5|C|975
3J71|1|5|G|976
3J71|1|5|C|977
3J71|1|5|G|978
*
3J71|1|5|C|1276
3J71|1|5|G|1277
3J71|1|5|C|1278
3J71|1|5|A|1279
3J71|1|5|C|1280
3J71|1|5|G|1281
3J71|1|5|G|1282
3J71|1|5|G|1283
3J71|1|5|G|1284
3J71|1|5|U|1285
3J71|1|5|C|1286
3J71|1|5|G|1287
3J71|1|5|G|1288
3J71|1|5|C|1289
3J71|1|5|G|1290
3J71|1|5|G|1291
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain E
- Ribosomal protein eL6
- Chain F
- Ribosomal protein uL30
- Chain e
- Ribosomal protein eL32
- Chain f
- Ribosomal protein eL33
- Chain r
- Ribosomal protein eL28
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