J3_3J71_016
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAGAUGGG*CCGUUCCGAAGGG*CGGCCGAUC
- Length
- 30 nucleotides
- Bulged bases
- 3J71|1|5|C|2470, 3J71|1|5|A|2472, 3J71|1|5|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J71|1|5|G|2450
3J71|1|5|A|2451
3J71|1|5|G|2452
3J71|1|5|A|2453
3J71|1|5|U|2454
3J71|1|5|G|2455
3J71|1|5|G|2456
3J71|1|5|G|2457
*
3J71|1|5|C|2464
3J71|1|5|C|2465
3J71|1|5|G|2466
3J71|1|5|U|2467
3J71|1|5|U|2468
3J71|1|5|C|2469
3J71|1|5|C|2470
3J71|1|5|G|2471
3J71|1|5|A|2472
3J71|1|5|A|2473
3J71|1|5|G|2474
3J71|1|5|G|2475
3J71|1|5|G|2476
*
3J71|1|5|C|2501
3J71|1|5|G|2502
3J71|1|5|G|2503
3J71|1|5|C|2504
3J71|1|5|C|2505
3J71|1|5|G|2506
3J71|1|5|A|2507
3J71|1|5|U|2508
3J71|1|5|C|2509
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- Ribosomal protein uL12
- Chain G
- Ribosomal protein eL8
- Chain N
- Ribosomal protein eL15
- Chain X
- Ribosomal protein uL23
- Chain j
- Ribosomal protein eL37
Coloring options: