J3_3J71_021

3D structure

PDB id

3J71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAU*GCUUCUGGG*CACAAGGG

Length

21 nucleotides

Bulged bases

3J71|1|5|C|4990, 3J71|1|5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J71|1|5|C|4969
3J71|1|5|C|4970
3J71|1|5|A|4971
3J71|1|5|U|4972
*
3J71|1|5|G|4986
3J71|1|5|C|4987
3J71|1|5|U|4988
3J71|1|5|U|4989
3J71|1|5|C|4990
3J71|1|5|U|4991
3J71|1|5|G|4992
3J71|1|5|G|4993
3J71|1|5|G|4994
*
3J71|1|5|C|5057
3J71|1|5|A|5058
3J71|1|5|C|5059
3J71|1|5|A|5060
3J71|1|5|A|5061
3J71|1|5|G|5062
3J71|1|5|G|5063
3J71|1|5|G|5064

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain P

Ribosomal protein uL22

Chain d

Ribosomal protein eL31