J3_3J72_005

3D structure

PDB id

3J72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CCAUAUCC*GGUC

Length

16 nucleotides

Bulged bases

3J72|1|5|U|2788, 3J72|1|5|A|2789, 3J72|1|5|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J72|1|5|G|2402
3J72|1|5|A|2403
3J72|1|5|A|2404
3J72|1|5|G|2405
*
3J72|1|5|C|2785
3J72|1|5|C|2786
3J72|1|5|A|2787
3J72|1|5|U|2788
3J72|1|5|A|2789
3J72|1|5|U|2790
3J72|1|5|C|2791
3J72|1|5|C|2792
*
3J72|1|5|G|2799
3J72|1|5|G|2800
3J72|1|5|U|2801
3J72|1|5|C|2802

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain g

Ribosomal protein eL34

Chain j

Ribosomal protein eL37

Chain l

Ribosomal protein eL39