J3_3J7A_015
3D structure
- PDB id
- 3J7A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUAAUUGG*CGCGCGGGUCUCAUAAUCCCGAGGUCG*UCCUCACAUU
- Length
- 46 nucleotides
- Bulged bases
- 3J7A|1|7|U|32, 3J7A|1|7|A|45
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J7A|1|7|G|2
3J7A|1|7|G|3
3J7A|1|7|U|4
3J7A|1|7|A|5
3J7A|1|7|A|6
3J7A|1|7|U|7
3J7A|1|7|U|8
3J7A|1|7|G|9
3J7A|1|7|G|10
*
3J7A|1|7|C|24
3J7A|1|7|G|25
3J7A|1|7|C|26
3J7A|1|7|G|27
3J7A|1|7|C|28
3J7A|1|7|G|29
3J7A|1|7|G|30
3J7A|1|7|G|31
3J7A|1|7|U|32
3J7A|1|7|C|33
3J7A|1|7|U|34
3J7A|1|7|C|35
3J7A|1|7|A|36
3J7A|1|7|U|37
3J7A|1|7|A|38
3J7A|1|7|A|39
3J7A|1|7|U|40
3J7A|1|7|C|41
3J7A|1|7|C|42
3J7A|1|7|C|43
3J7A|1|7|G|44
3J7A|1|7|A|45
3J7A|1|7|G|46
3J7A|1|7|G|47
3J7A|1|7|U|48
3J7A|1|7|C|49
3J7A|1|7|G|50
*
3J7A|1|7|U|60
3J7A|1|7|C|61
3J7A|1|7|C|62
3J7A|1|7|U|63
3J7A|1|7|C|64
3J7A|1|7|A|65
3J7A|1|7|C|66
3J7A|1|7|A|67
3J7A|1|7|U|68
3J7A|1|7|U|69
Current chains
- Chain 7
- tRNA
Nearby chains
- Chain 5
- 40S ribosomal protein eS28
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 40S ribosomal protein uS7
- Chain P
- 40S ribosomal protein uS11
Coloring options: