J3_3J7Q_013

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGCCAUAC*GG*UGCUG

Length

16 nucleotides

Bulged bases

3J7Q|1|7|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J7Q|1|7|C|6
3J7Q|1|7|G|7
3J7Q|1|7|G|8
3J7Q|1|7|C|9
3J7Q|1|7|C|10
3J7Q|1|7|A|11
3J7Q|1|7|U|12
3J7Q|1|7|A|13
3J7Q|1|7|C|14
*
3J7Q|1|7|G|65
3J7Q|1|7|G|66
*
3J7Q|1|7|U|109
3J7Q|1|7|G|110
3J7Q|1|7|C|111
3J7Q|1|7|U|112
3J7Q|1|7|G|113

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

Ribosomal protein uL18

Chain I

Ribosomal protein uL16

Chain J

Ribosomal protein uL5

Chain T

Ribosomal protein eL21