3D structure

PDB id
3J7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the idle mammalian ribosome-Sec61 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGUCCGCGCAGUCCGC*GCGGUGC*GACGUCGGCUAC
Length
35 nucleotides
Bulged bases
3J7Q|1|5|G|703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J7Q|1|5|G|443
3J7Q|1|5|G|444
3J7Q|1|5|U|445
3J7Q|1|5|C|446
3J7Q|1|5|C|447
3J7Q|1|5|G|448
3J7Q|1|5|C|449
3J7Q|1|5|G|450
3J7Q|1|5|C|451
3J7Q|1|5|A|452
3J7Q|1|5|G|453
3J7Q|1|5|U|454
3J7Q|1|5|C|455
3J7Q|1|5|C|456
3J7Q|1|5|G|457
3J7Q|1|5|C|458
*
3J7Q|1|5|G|698
3J7Q|1|5|C|699
3J7Q|1|5|G|700
3J7Q|1|5|G|701
3J7Q|1|5|U|702
3J7Q|1|5|G|703
3J7Q|1|5|C|704
*
3J7Q|1|5|G|1293
3J7Q|1|5|A|1294
3J7Q|1|5|C|1295
3J7Q|1|5|G|1296
3J7Q|1|5|U|1297
3J7Q|1|5|C|1298
3J7Q|1|5|G|1299
3J7Q|1|5|G|1300
3J7Q|1|5|C|1301
3J7Q|1|5|U|1302
3J7Q|1|5|A|1303
3J7Q|1|5|C|1304

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain E
Ribosomal protein eL6
Chain e
Ribosomal protein eL32
Chain f
Ribosomal protein eL33
Chain r
Ribosomal protein eL28

Coloring options:

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