J3_3J7R_028

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAACUA*UAGGG*UAAUCGAA

Length

20 nucleotides

Bulged bases

3J7R|1|5|A|1534, 3J7R|1|5|A|1638, 3J7R|1|5|G|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J7R|1|5|U|1531
3J7R|1|5|G|1532
3J7R|1|5|A|1533
3J7R|1|5|A|1534
3J7R|1|5|C|1535
3J7R|1|5|U|1536
3J7R|1|5|A|1537
*
3J7R|1|5|U|1622
3J7R|1|5|A|1623
3J7R|1|5|G|1624
3J7R|1|5|G|1625
3J7R|1|5|G|1626
*
3J7R|1|5|U|1636
3J7R|1|5|A|1637
3J7R|1|5|A|1638
3J7R|1|5|U|1639
3J7R|1|5|C|1640
3J7R|1|5|G|1641
3J7R|1|5|A|1642
3J7R|1|5|A|1643

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain N

Ribosomal protein eL15

Chain P

Ribosomal protein uL22

Chain j

Ribosomal protein eL37

Chain l

Ribosomal protein eL39