J3_3J7R_031
3D structure
- PDB id
- 3J7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCCGGUGAGGCGGGGGGGCGAG*CUCUCGCUUCUGGCGCCAAG*CGACCCGCUCCGGG
- Length
- 56 nucleotides
- Bulged bases
- 3J7R|1|5|G|4084, 3J7R|1|5|G|4086, 3J7R|1|5|G|4087, 3J7R|1|5|C|4116, 3J7R|1|5|U|4117, 3J7R|1|5|U|4118, 3J7R|1|5|C|4119, 3J7R|1|5|U|4120, 3J7R|1|5|G|4121, 3J7R|1|5|C|4158, 3J7R|1|5|C|4162, 3J7R|1|5|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J7R|1|5|C|4078
3J7R|1|5|C|4079
3J7R|1|5|C|4080
3J7R|1|5|G|4081
3J7R|1|5|G|4082
3J7R|1|5|U|4083
3J7R|1|5|G|4084
3J7R|1|5|A|4085
3J7R|1|5|G|4086
3J7R|1|5|G|4087
3J7R|1|5|C|4088
3J7R|1|5|G|4089
3J7R|1|5|G|4090
3J7R|1|5|G|4091
3J7R|1|5|G|4092
3J7R|1|5|G|4093
3J7R|1|5|G|4094
3J7R|1|5|G|4095
3J7R|1|5|C|4096
3J7R|1|5|G|4097
3J7R|1|5|A|4098
3J7R|1|5|G|4099
*
3J7R|1|5|C|4110
3J7R|1|5|U|4111
3J7R|1|5|C|4112
3J7R|1|5|U|4113
3J7R|1|5|C|4114
3J7R|1|5|G|4115
3J7R|1|5|C|4116
3J7R|1|5|U|4117
3J7R|1|5|U|4118
3J7R|1|5|C|4119
3J7R|1|5|U|4120
3J7R|1|5|G|4121
3J7R|1|5|G|4122
3J7R|1|5|C|4123
3J7R|1|5|G|4124
3J7R|1|5|C|4125
3J7R|1|5|C|4126
3J7R|1|5|A|4127
3J7R|1|5|A|4128
3J7R|1|5|G|4129
*
3J7R|1|5|C|4155
3J7R|1|5|G|4156
3J7R|1|5|A|4157
3J7R|1|5|C|4158
3J7R|1|5|C|4159
3J7R|1|5|C|4160
3J7R|1|5|G|4161
3J7R|1|5|C|4162
3J7R|1|5|U|4163
3J7R|1|5|C|4164
3J7R|1|5|C|4165
3J7R|1|5|G|4166
3J7R|1|5|G|4167
3J7R|1|5|G|4168
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- Ribosomal protein uL2
- Chain G
- Ribosomal protein eL8
- Chain N
- Ribosomal protein eL15
- Chain SB
- Ribosomal protein eS1
- Chain X
- Ribosomal protein uL23
- Chain Z
- Ribosomal protein eL27
- Chain c
- Ribosomal protein eL30
- Chain g
- Ribosomal protein eL34
- Chain p
- Ribosomal protein eL43
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