J3_3J7R_042
3D structure
- PDB id
- 3J7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUAGCUCAGGGUAGAGCAGG*CCGUGUCCUUG*CGAGUCC
- Length
- 40 nucleotides
- Bulged bases
- 3J7R|1|S5|G|18, 3J7R|1|S5|G|19, 3J7R|1|S5|U|20, 3J7R|1|S5|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J7R|1|S5|G|5
3J7R|1|S5|G|6
3J7R|1|S5|A|7
3J7R|1|S5|U|8
3J7R|1|S5|A|9
3J7R|1|S5|G|10
3J7R|1|S5|C|11
3J7R|1|S5|U|12
3J7R|1|S5|C|13
3J7R|1|S5|A|14
3J7R|1|S5|G|15
3J7R|1|S5|G|18
3J7R|1|S5|G|19
3J7R|1|S5|U|20
3J7R|1|S5|A|21
3J7R|1|S5|G|22
3J7R|1|S5|A|23
3J7R|1|S5|G|24
3J7R|1|S5|C|25
3J7R|1|S5|A|26
3J7R|1|S5|G|27
3J7R|1|S5|G|28
*
3J7R|1|S5|C|42
3J7R|1|S5|C|43
3J7R|1|S5|G|44
3J7R|1|S5|U|45
3J7R|1|S5|G|46
3J7R|1|S5|U|47
3J7R|1|S5|C|48
3J7R|1|S5|C|49
3J7R|1|S5|U|50
3J7R|1|S5|U|51
3J7R|1|S5|G|52
*
3J7R|1|S5|C|62
3J7R|1|S5|G|63
3J7R|1|S5|A|64
3J7R|1|S5|G|65
3J7R|1|S5|U|66
3J7R|1|S5|C|67
3J7R|1|S5|C|68
Current chains
- Chain S5
- A/P tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- Ribosomal protein uL16
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: