J3_3J81_002

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUCA*UAACUACUG*CAUUUG

Length

20 nucleotides

Bulged bases

3J81|1|2|C|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|C|879
3J81|1|2|A|880
3J81|1|2|U|881
3J81|1|2|C|882
3J81|1|2|A|883
*
3J81|1|2|U|927
3J81|1|2|A|928
3J81|1|2|A|929
3J81|1|2|C|930
3J81|1|2|U|931
3J81|1|2|A|932
3J81|1|2|C|933
3J81|1|2|U|934
3J81|1|2|G|935
*
3J81|1|2|C|942
3J81|1|2|A|943
3J81|1|2|U|944
3J81|1|2|U|945
3J81|1|2|U|946
3J81|1|2|G|947

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

eS1

Chain N

uS15

Chain O

uS11

Chain a

eS26