J3_3J81_006
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 3J81|1|2|G|1198, 3J81|1|2|G|1200, 3J81|1|2|A|1202
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J81_006 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1333
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J81|1|2|C|1179
3J81|1|2|U|1180
3J81|1|2|U|1181
3J81|1|2|A|1182
3J81|1|2|A|1183
3J81|1|2|U|1184
3J81|1|2|U|1185
3J81|1|2|U|1186
*
3J81|1|2|G|1197
3J81|1|2|G|1198
3J81|1|2|G|1199
3J81|1|2|G|1200
3J81|1|2|A|1201
3J81|1|2|A|1202
3J81|1|2|A|1203
3J81|1|2|C|1204
3J81|1|2|U|1205
3J81|1|2|C|1206
3J81|1|2|A|1207
3J81|1|2|C|1208
*
3J81|1|2|G|1452
3J81|1|2|G|1453
3J81|1|2|C|1454
3J81|1|2|C|1455
3J81|1|2|G|1456
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain P
- uS19
- Chain S
- uS13
- Chain U
- uS10
- Chain d
- uS14
- Chain f
- eS31
- Chain i
- eIF1A
Coloring options: