J3_3J81_007

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAGAC*GGGUGG*CUUAGACG

Length

20 nucleotides

Bulged bases

3J81|1|2|A|1216, 3J81|1|2|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|C|1214
3J81|1|2|C|1215
3J81|1|2|A|1216
3J81|1|2|G|1217
3J81|1|2|A|1218
3J81|1|2|C|1219
*
3J81|1|2|G|1262
3J81|1|2|G|1263
3J81|1|2|G|1264
3J81|1|2|U|1265
3J81|1|2|G|1266
3J81|1|2|G|1267
*
3J81|1|2|C|1439
3J81|1|2|U|1440
3J81|1|2|U|1441
3J81|1|2|A|1442
3J81|1|2|G|1443
3J81|1|2|A|1444
3J81|1|2|C|1445
3J81|1|2|G|1446

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

eS10

Chain M

eS12

Chain d

uS14

Chain f

eS31