J3_3J81_014

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAG*CAGGC*GCUCGAAU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|A|760
3J81|1|2|G|761
3J81|1|2|A|762
3J81|1|2|G|763
*
3J81|1|2|C|773
3J81|1|2|A|774
3J81|1|2|G|775
3J81|1|2|G|776
3J81|1|2|C|777
*
3J81|1|2|G|782
3J81|1|2|C|783
3J81|1|2|U|784
3J81|1|2|C|785
3J81|1|2|G|786
3J81|1|2|A|787
3J81|1|2|A|788
3J81|1|2|U|789

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain Y

eS24