J3_3J81_017

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCCUUG*CAU

Length

26 nucleotides

Bulged bases

3J81|1|2|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|A|212
3J81|1|2|G|213
3J81|1|2|A|214
3J81|1|2|U|215
3J81|1|2|A|216
3J81|1|2|A|217
3J81|1|2|A|218
3J81|1|2|A|219
3J81|1|2|A|220
3J81|1|2|A|221
3J81|1|2|U|222
3J81|1|2|C|223
3J81|1|2|A|224
3J81|1|2|A|225
3J81|1|2|U|226
3J81|1|2|G|227
*
3J81|1|2|C|236
3J81|1|2|U|237
3J81|1|2|C|238
3J81|1|2|C|239
3J81|1|2|U|240
3J81|1|2|U|241
3J81|1|2|G|242
*
3J81|1|2|C|249
3J81|1|2|A|250
3J81|1|2|U|251

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain G

eS6

Chain I

eS8

Chain L

uS17