J3_3J9Y_003

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

3J9Y|1|A|U|686, 3J9Y|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Y_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0761

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3J9Y|1|A|U|683
3J9Y|1|A|G|684
3J9Y|1|A|A|685
3J9Y|1|A|U|686
3J9Y|1|A|C|687
3J9Y|1|A|U|688
3J9Y|1|A|A|689
*
3J9Y|1|A|U|773
3J9Y|1|A|G|774
3J9Y|1|A|G|775
*
3J9Y|1|A|C|791
3J9Y|1|A|A|792
3J9Y|1|A|A|793
3J9Y|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2