J3_3J9Y_004

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Y_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0685

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3J9Y|1|A|C|698
3J9Y|1|A|A|699
3J9Y|1|A|G|700
*
3J9Y|1|A|C|732
3J9Y|1|A|G|733
3J9Y|1|A|A|734
3J9Y|1|A|A|735
3J9Y|1|A|C|736
*
3J9Y|1|A|G|760
3J9Y|1|A|A|761
3J9Y|1|A|U|762
3J9Y|1|A|G|763

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2