J3_3J9Y_010

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

3J9Y|1|A|A|2518, 3J9Y|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Y_010 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0956

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

3J9Y|1|A|C|2517
3J9Y|1|A|A|2518
3J9Y|1|A|U|2519
3J9Y|1|A|C|2520
*
3J9Y|1|A|G|2545
3J9Y|1|A|U|2546
3J9Y|1|A|A|2547
*
3J9Y|1|A|U|2561
3J9Y|1|A|U|2562
3J9Y|1|A|U|2563
3J9Y|1|A|A|2564
3J9Y|1|A|A|2565
3J9Y|1|A|A|2566
3J9Y|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14