J3_3J9Y_037

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

3J9Y|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Y_037 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1505

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J9Y|1|A|G|297
3J9Y|1|A|G|298
3J9Y|1|A|A|299
3J9Y|1|A|A|300
3J9Y|1|A|G|301
*
3J9Y|1|A|C|316
3J9Y|1|A|G|317
3J9Y|1|A|C|318
3J9Y|1|A|G|319
3J9Y|1|A|A|320
3J9Y|1|A|U|321
3J9Y|1|A|A|322
3J9Y|1|A|C|323
3J9Y|1|A|A|324
3J9Y|1|A|G|325
*
3J9Y|1|A|C|337
3J9Y|1|A|G|338
3J9Y|1|A|U|339
3J9Y|1|A|A|340
3J9Y|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24