J3_3JAG_021

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAG_021 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.2045

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

3JAG|1|9|A|816
3JAG|1|9|G|817
3JAG|1|9|A|818
3JAG|1|9|G|819
*
3JAG|1|9|C|829
3JAG|1|9|A|830
3JAG|1|9|G|831
*
3JAG|1|9|C|843
3JAG|1|9|U|844
3JAG|1|9|G|845
3JAG|1|9|G|846
3JAG|1|9|A|847
3JAG|1|9|U|848

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24