J3_3JAG_026
3D structure
- PDB id
- 3JAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 3JAG|1|9|G|1256, 3JAG|1|9|A|1258, 3JAG|1|9|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAG_026 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0914
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JAG|1|9|C|1237
3JAG|1|9|U|1238
3JAG|1|9|U|1239
3JAG|1|9|A|1240
3JAG|1|9|A|1241
3JAG|1|9|U|1242
3JAG|1|9|U|1243
3JAG|1|9|U|1244
*
3JAG|1|9|G|1255
3JAG|1|9|G|1256
3JAG|1|9|G|1257
3JAG|1|9|A|1258
3JAG|1|9|A|1259
3JAG|1|9|A|1260
3JAG|1|9|C|1261
3JAG|1|9|C|1262
3JAG|1|9|U|1263
3JAG|1|9|C|1264
3JAG|1|9|A|1265
3JAG|1|9|C|1266
*
3JAG|1|9|G|1516
3JAG|1|9|G|1517
3JAG|1|9|C|1518
3JAG|1|9|U|1519
3JAG|1|9|G|1520
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain PP
- uS19
- Chain SS
- uS13
- Chain UU
- uS10
- Chain dd
- uS14
- Chain ii
- eRF1
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