J3_3JAG_040
3D structure
- PDB id
- 3JAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- UCGGUUG*CCUUCG*CGCACGCCGUUCGUGG
- Length
- 29 nucleotides
- Bulged bases
- 3JAG|1|5|C|4883, 3JAG|1|5|C|4937, 3JAG|1|5|C|4939, 3JAG|1|5|C|4944, 3JAG|1|5|G|4945, 3JAG|1|5|G|4951
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAG|1|5|U|4748
3JAG|1|5|C|4749
3JAG|1|5|G|4750
3JAG|1|5|G|4751
3JAG|1|5|U|4752
3JAG|1|5|U|4753
3JAG|1|5|G|4754
*
3JAG|1|5|C|4879
3JAG|1|5|C|4880
3JAG|1|5|U|4881
3JAG|1|5|U|4882
3JAG|1|5|C|4883
3JAG|1|5|G|4884
*
3JAG|1|5|C|4935
3JAG|1|5|G|4936
3JAG|1|5|C|4937
3JAG|1|5|A|4938
3JAG|1|5|C|4939
3JAG|1|5|G|4941
3JAG|1|5|C|4942
3JAG|1|5|C|4944
3JAG|1|5|G|4945
3JAG|1|5|U|4946
3JAG|1|5|U|4947
3JAG|1|5|C|4948
3JAG|1|5|G|4949
3JAG|1|5|U|4950
3JAG|1|5|G|4951
3JAG|1|5|G|4952
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain E
- eL6
- Chain M
- eL14
- Chain O
- uL13
- Chain f
- eL33
Coloring options: