3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CUUAAUUU*GGGAAACCUCAC*GGCUG
Length
25 nucleotides
Bulged bases
3JAI|1|9|G|1256, 3JAI|1|9|A|1258, 3JAI|1|9|A|1260
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JAI_026 not in the Motif Atlas
Homologous match to J3_8C3A_040
Geometric discrepancy: 0.0919
The information below is about J3_8C3A_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.3
Basepair signature
cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

3JAI|1|9|C|1237
3JAI|1|9|U|1238
3JAI|1|9|U|1239
3JAI|1|9|A|1240
3JAI|1|9|A|1241
3JAI|1|9|U|1242
3JAI|1|9|U|1243
3JAI|1|9|U|1244
*
3JAI|1|9|G|1255
3JAI|1|9|G|1256
3JAI|1|9|G|1257
3JAI|1|9|A|1258
3JAI|1|9|A|1259
3JAI|1|9|A|1260
3JAI|1|9|C|1261
3JAI|1|9|C|1262
3JAI|1|9|U|1263
3JAI|1|9|C|1264
3JAI|1|9|A|1265
3JAI|1|9|C|1266
*
3JAI|1|9|G|1516
3JAI|1|9|G|1517
3JAI|1|9|C|1518
3JAI|1|9|U|1519
3JAI|1|9|G|1520

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain PP
uS19
Chain SS
uS13
Chain UU
uS10
Chain dd
uS14
Chain ii
eRF1

Coloring options:


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