3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
UCGGUUG*CCUUCG*CGCACGCCGUUCGUGG
Length
29 nucleotides
Bulged bases
3JAI|1|5|C|4883, 3JAI|1|5|C|4937, 3JAI|1|5|C|4939, 3JAI|1|5|G|4951
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAI|1|5|U|4748
3JAI|1|5|C|4749
3JAI|1|5|G|4750
3JAI|1|5|G|4751
3JAI|1|5|U|4752
3JAI|1|5|U|4753
3JAI|1|5|G|4754
*
3JAI|1|5|C|4879
3JAI|1|5|C|4880
3JAI|1|5|U|4881
3JAI|1|5|U|4882
3JAI|1|5|C|4883
3JAI|1|5|G|4884
*
3JAI|1|5|C|4935
3JAI|1|5|G|4936
3JAI|1|5|C|4937
3JAI|1|5|A|4938
3JAI|1|5|C|4939
3JAI|1|5|G|4941
3JAI|1|5|C|4942
3JAI|1|5|C|4944
3JAI|1|5|G|4945
3JAI|1|5|U|4946
3JAI|1|5|U|4947
3JAI|1|5|C|4948
3JAI|1|5|G|4949
3JAI|1|5|U|4950
3JAI|1|5|G|4951
3JAI|1|5|G|4952

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain E
eL6
Chain M
eL14
Chain O
uL13
Chain f
eL33

Coloring options:

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