J3_3JAJ_013

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

3JAJ|1|5|U|4988, 3JAJ|1|5|C|4990, 3JAJ|1|5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|5|C|4970
3JAJ|1|5|A|4971
3JAJ|1|5|U|4972
*
3JAJ|1|5|G|4986
3JAJ|1|5|C|4987
3JAJ|1|5|U|4988
3JAJ|1|5|U|4989
3JAJ|1|5|C|4990
3JAJ|1|5|U|4991
*
3JAJ|1|5|A|5060
3JAJ|1|5|A|5061
3JAJ|1|5|G|5062
3JAJ|1|5|G|5063

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 4

Signal recognition particle RNA; SRP RNA

Chain B

Ribosomal protein uL3

Chain P

Ribosomal protein uL22

Chain d

Ribosomal protein eL31