J3_3JAJ_016
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JAJ_016 not in the Motif Atlas
- Homologous match to J3_8P9A_068
- Geometric discrepancy: 0.1588
- The information below is about J3_8P9A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.1
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3JAJ|1|S2|A|40
3JAJ|1|S2|G|41
*
3JAJ|1|S2|C|481
3JAJ|1|S2|G|482
3JAJ|1|S2|C|483
3JAJ|1|S2|A|484
3JAJ|1|S2|A|485
3JAJ|1|S2|A|486
3JAJ|1|S2|U|487
*
3JAJ|1|S2|A|512
3JAJ|1|S2|G|513
3JAJ|1|S2|U|514
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain S4
- SRP14
- Chain SJ
- Ribosomal protein uS4
- Chain SX
- Ribosomal protein uS12
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