J3_3JAJ_019

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCAGG*CCAGUAA*UGAUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|S2|C|1218
3JAJ|1|S2|C|1219
3JAJ|1|S2|A|1220
3JAJ|1|S2|G|1221
3JAJ|1|S2|G|1222
*
3JAJ|1|S2|C|1645
3JAJ|1|S2|C|1646
3JAJ|1|S2|A|1647
3JAJ|1|S2|G|1648
3JAJ|1|S2|U|1649
3JAJ|1|S2|A|1650
3JAJ|1|S2|A|1651
*
3JAJ|1|S2|U|1673
3JAJ|1|S2|G|1674
3JAJ|1|S2|A|1675
3JAJ|1|S2|U|1676
3JAJ|1|S2|U|1677
3JAJ|1|S2|A|1678
3JAJ|1|S2|A|1679
3JAJ|1|S2|G|1680

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SF

Ribosomal protein uS7

Chain SQ

Ribosomal protein uS9

Chain SR

Ribosomal protein eS17

Chain Sc

Ribosomal protein eS28