J3_3JAJ_030
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GCGACC*GAGGGAGCGAGACCCGUCGCCGCG*CGCACGGGGUCGGC
- Length
- 44 nucleotides
- Bulged bases
- 3JAJ|1|5|A|960, 3JAJ|1|5|C|962, 3JAJ|1|5|G|965, 3JAJ|1|5|U|971, 3JAJ|1|5|G|1281, 3JAJ|1|5|G|1284, 3JAJ|1|5|G|1288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAJ|1|5|G|708
3JAJ|1|5|C|709
3JAJ|1|5|G|710
3JAJ|1|5|A|711
3JAJ|1|5|C|712
3JAJ|1|5|C|713
*
3JAJ|1|5|G|955
3JAJ|1|5|A|956
3JAJ|1|5|G|957
3JAJ|1|5|G|958
3JAJ|1|5|G|959
3JAJ|1|5|A|960
3JAJ|1|5|G|961
3JAJ|1|5|C|962
3JAJ|1|5|G|963
3JAJ|1|5|A|964
3JAJ|1|5|G|965
3JAJ|1|5|A|966
3JAJ|1|5|C|967
3JAJ|1|5|C|968
3JAJ|1|5|C|969
3JAJ|1|5|G|970
3JAJ|1|5|U|971
3JAJ|1|5|C|972
3JAJ|1|5|G|973
3JAJ|1|5|C|974
3JAJ|1|5|C|975
3JAJ|1|5|G|976
3JAJ|1|5|C|977
3JAJ|1|5|G|978
*
3JAJ|1|5|C|1276
3JAJ|1|5|G|1277
3JAJ|1|5|C|1278
3JAJ|1|5|A|1279
3JAJ|1|5|C|1280
3JAJ|1|5|G|1281
3JAJ|1|5|G|1282
3JAJ|1|5|G|1283
3JAJ|1|5|G|1284
3JAJ|1|5|U|1285
3JAJ|1|5|C|1286
3JAJ|1|5|G|1287
3JAJ|1|5|G|1288
3JAJ|1|5|C|1289
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain E
- Ribosomal protein eL6
- Chain F
- Ribosomal protein uL30
- Chain e
- Ribosomal protein eL32
- Chain f
- Ribosomal protein eL33
- Chain r
- Ribosomal protein eL28
Coloring options: