Loop J3_3JAJ

3D structure

PDB id: 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the engaged state of the mammalian SRP-ribosome complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å

Loop

Sequence: CGCUCUCGCACACGCAGUUU*AGAAG*CGUGGAAUGGAGUG
Length: 39 nucleotides
Bulged bases: 3JAJ|1|5|G|1697, 3JAJ|1|5|C|1698, 3JAJ|1|5|A|1699, 3JAJ|1|5|C|1718, 3JAJ|1|5|G|1724, 3JAJ|1|5|A|1805, 3JAJ|1|5|U|1834
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JAJ|1|5|C|1690
3JAJ|1|5|G|1691
3JAJ|1|5|C|1692
3JAJ|1|5|U|1693
3JAJ|1|5|C|1694
3JAJ|1|5|U|1695
3JAJ|1|5|C|1696
3JAJ|1|5|G|1697
3JAJ|1|5|C|1698
3JAJ|1|5|A|1699
3JAJ|1|5|C|1718
3JAJ|1|5|A|1719
3JAJ|1|5|C|1720
3JAJ|1|5|G|1721
3JAJ|1|5|C|1722
3JAJ|1|5|A|1723
3JAJ|1|5|G|1724
3JAJ|1|5|U|1725
3JAJ|1|5|U|1726
3JAJ|1|5|U|1727
*
3JAJ|1|5|A|1802
3JAJ|1|5|G|1803
3JAJ|1|5|A|1804
3JAJ|1|5|A|1805
3JAJ|1|5|G|1806
*
3JAJ|1|5|C|1832
3JAJ|1|5|G|1833
3JAJ|1|5|U|1834
3JAJ|1|5|G|1835
3JAJ|1|5|G|1836
3JAJ|1|5|A|1837
3JAJ|1|5|A|1838
3JAJ|1|5|U|1839
3JAJ|1|5|G|1840
3JAJ|1|5|G|1842
3JAJ|1|5|A|1843
3JAJ|1|5|G|1844
3JAJ|1|5|U|1845
3JAJ|1|5|G|1846

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

Chain C: Ribosomal protein uL4
Chain F: Ribosomal protein uL30
Chain Q: Ribosomal protein eL18
Chain T: Ribosomal protein eL21
Chain b: Ribosomal protein eL29

J3_3JAJ_033