J3_3JAJ_037

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGCACGG*CUGACCCGGUGAGGC*GCUCCGGGGACAGUGCC

Length

39 nucleotides

Bulged bases

3JAJ|1|5|G|4084, 3JAJ|1|5|G|4086, 3JAJ|1|5|G|4087, 3JAJ|1|5|C|4162, 3JAJ|1|5|U|4163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|5|G|3933
3JAJ|1|5|G|3934
3JAJ|1|5|C|3935
3JAJ|1|5|A|3936
3JAJ|1|5|C|3937
3JAJ|1|5|G|3938
3JAJ|1|5|G|3939
*
3JAJ|1|5|C|4074
3JAJ|1|5|U|4075
3JAJ|1|5|G|4076
3JAJ|1|5|A|4077
3JAJ|1|5|C|4078
3JAJ|1|5|C|4079
3JAJ|1|5|C|4080
3JAJ|1|5|G|4081
3JAJ|1|5|G|4082
3JAJ|1|5|U|4083
3JAJ|1|5|G|4084
3JAJ|1|5|A|4085
3JAJ|1|5|G|4086
3JAJ|1|5|G|4087
3JAJ|1|5|C|4088
*
3JAJ|1|5|G|4161
3JAJ|1|5|C|4162
3JAJ|1|5|U|4163
3JAJ|1|5|C|4164
3JAJ|1|5|C|4165
3JAJ|1|5|G|4166
3JAJ|1|5|G|4167
3JAJ|1|5|G|4168
3JAJ|1|5|G|4169
3JAJ|1|5|A|4170
3JAJ|1|5|C|4171
3JAJ|1|5|A|4172
3JAJ|1|5|G|4173
3JAJ|1|5|U|4174
3JAJ|1|5|G|4175
3JAJ|1|5|C|4176
3JAJ|1|5|C|4177

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

Ribosomal protein uL2

Chain G

Ribosomal protein eL8

Chain N

Ribosomal protein eL15

Chain X

Ribosomal protein uL23

Chain i

Ribosomal protein eL36