J3_3JAM_004

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

3JAM|1|2|C|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAM_004 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.0717

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

3JAM|1|2|A|880
3JAM|1|2|U|881
3JAM|1|2|C|882
3JAM|1|2|A|883
*
3JAM|1|2|U|927
3JAM|1|2|A|928
3JAM|1|2|A|929
3JAM|1|2|C|930
3JAM|1|2|U|931
3JAM|1|2|A|932
3JAM|1|2|C|933
3JAM|1|2|U|934
3JAM|1|2|G|935
*
3JAM|1|2|C|942
3JAM|1|2|A|943
3JAM|1|2|U|944
3JAM|1|2|U|945
3JAM|1|2|U|946

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

eS1

Chain N

uS15

Chain O

uS11

Chain a

eS26