J3_3JAM_015

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCCUUG*CAU

Length

26 nucleotides

Bulged bases

3JAM|1|2|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAM|1|2|A|212
3JAM|1|2|G|213
3JAM|1|2|A|214
3JAM|1|2|U|215
3JAM|1|2|A|216
3JAM|1|2|A|217
3JAM|1|2|A|218
3JAM|1|2|A|219
3JAM|1|2|A|220
3JAM|1|2|A|221
3JAM|1|2|U|222
3JAM|1|2|C|223
3JAM|1|2|A|224
3JAM|1|2|A|225
3JAM|1|2|U|226
3JAM|1|2|G|227
*
3JAM|1|2|C|236
3JAM|1|2|U|237
3JAM|1|2|C|238
3JAM|1|2|C|239
3JAM|1|2|U|240
3JAM|1|2|U|241
3JAM|1|2|G|242
*
3JAM|1|2|C|249
3JAM|1|2|A|250
3JAM|1|2|U|251

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain G

eS6

Chain I

eS8

Chain L

uS17