J3_3JAM_016

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CUUAAUUUG*CGGGGAAACUCAC*GGCCG

Length

27 nucleotides

Bulged bases

3JAM|1|2|G|1198, 3JAM|1|2|G|1200, 3JAM|1|2|A|1202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAM|1|2|C|1179
3JAM|1|2|U|1180
3JAM|1|2|U|1181
3JAM|1|2|A|1182
3JAM|1|2|A|1183
3JAM|1|2|U|1184
3JAM|1|2|U|1185
3JAM|1|2|U|1186
3JAM|1|2|G|1187
*
3JAM|1|2|C|1196
3JAM|1|2|G|1197
3JAM|1|2|G|1198
3JAM|1|2|G|1199
3JAM|1|2|G|1200
3JAM|1|2|A|1201
3JAM|1|2|A|1202
3JAM|1|2|A|1203
3JAM|1|2|C|1204
3JAM|1|2|U|1205
3JAM|1|2|C|1206
3JAM|1|2|A|1207
3JAM|1|2|C|1208
*
3JAM|1|2|G|1452
3JAM|1|2|G|1453
3JAM|1|2|C|1454
3JAM|1|2|C|1455
3JAM|1|2|G|1456

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS19

Chain Q

uS9

Chain S

uS13

Chain U

uS10

Chain d

uS14

Chain f

eS31

Chain i

eIF1A