J3_3JAP_003

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

3JAP|1|2|C|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JAP_003 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.1697

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

3JAP|1|2|A|880
3JAP|1|2|U|881
3JAP|1|2|C|882
3JAP|1|2|A|883
*
3JAP|1|2|U|927
3JAP|1|2|A|928
3JAP|1|2|A|929
3JAP|1|2|C|930
3JAP|1|2|U|931
3JAP|1|2|A|932
3JAP|1|2|C|933
3JAP|1|2|U|934
3JAP|1|2|G|935
*
3JAP|1|2|C|942
3JAP|1|2|A|943
3JAP|1|2|U|944
3JAP|1|2|U|945
3JAP|1|2|U|946

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

eS1

Chain N

uS15

Chain O

uS11

Chain a

eS26