J3_3JAP_005

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CCA*UAGUAA*UGAUUACG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|C|1160
3JAP|1|2|C|1161
3JAP|1|2|A|1162
*
3JAP|1|2|U|1580
3JAP|1|2|A|1581
3JAP|1|2|G|1582
3JAP|1|2|U|1583
3JAP|1|2|A|1584
3JAP|1|2|A|1585
*
3JAP|1|2|U|1607
3JAP|1|2|G|1608
3JAP|1|2|A|1609
3JAP|1|2|U|1610
3JAP|1|2|U|1611
3JAP|1|2|A|1612
3JAP|1|2|C|1613
3JAP|1|2|G|1614

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain c

eS28