J3_3JAP_007

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUC*GCCG

Length

22 nucleotides

Bulged bases

3JAP|1|2|G|1198, 3JAP|1|2|G|1200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|C|1179
3JAP|1|2|U|1180
3JAP|1|2|U|1181
3JAP|1|2|A|1182
3JAP|1|2|A|1183
3JAP|1|2|U|1184
3JAP|1|2|U|1185
3JAP|1|2|U|1186
*
3JAP|1|2|G|1197
3JAP|1|2|G|1198
3JAP|1|2|G|1199
3JAP|1|2|G|1200
3JAP|1|2|A|1201
3JAP|1|2|A|1202
3JAP|1|2|A|1203
3JAP|1|2|C|1204
3JAP|1|2|U|1205
3JAP|1|2|C|1206
*
3JAP|1|2|G|1453
3JAP|1|2|C|1454
3JAP|1|2|C|1455
3JAP|1|2|G|1456

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS19

Chain S

uS13

Chain U

uS10

Chain d

uS14

Chain f

eS31

Chain i

eIF1A

Chain l

eIF2 beta