J3_3JAP_010

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GUG*UGUC*GAUAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|G|1291
3JAP|1|2|U|1292
3JAP|1|2|G|1293
*
3JAP|1|2|U|1302
3JAP|1|2|G|1303
3JAP|1|2|U|1304
3JAP|1|2|C|1305
*
3JAP|1|2|G|1317
3JAP|1|2|A|1318
3JAP|1|2|U|1319
3JAP|1|2|A|1320
3JAP|1|2|A|1321
3JAP|1|2|C|1322

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

uS2

Chain C

uS5

Chain R

eS17