J3_3JAP_013

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCCUUG*CAU

Length

26 nucleotides

Bulged bases

3JAP|1|2|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|A|212
3JAP|1|2|G|213
3JAP|1|2|A|214
3JAP|1|2|U|215
3JAP|1|2|A|216
3JAP|1|2|A|217
3JAP|1|2|A|218
3JAP|1|2|A|219
3JAP|1|2|A|220
3JAP|1|2|A|221
3JAP|1|2|U|222
3JAP|1|2|C|223
3JAP|1|2|A|224
3JAP|1|2|A|225
3JAP|1|2|U|226
3JAP|1|2|G|227
*
3JAP|1|2|C|236
3JAP|1|2|U|237
3JAP|1|2|C|238
3JAP|1|2|C|239
3JAP|1|2|U|240
3JAP|1|2|U|241
3JAP|1|2|G|242
*
3JAP|1|2|C|249
3JAP|1|2|A|250
3JAP|1|2|U|251

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain G

eS6

Chain I

eS8

Chain L

uS17