J3_3JAQ_003

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAUCA*UAACUACUG*CAUUUG

Length

20 nucleotides

Bulged bases

3JAQ|1|2|C|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|C|879
3JAQ|1|2|A|880
3JAQ|1|2|U|881
3JAQ|1|2|C|882
3JAQ|1|2|A|883
*
3JAQ|1|2|U|927
3JAQ|1|2|A|928
3JAQ|1|2|A|929
3JAQ|1|2|C|930
3JAQ|1|2|U|931
3JAQ|1|2|A|932
3JAQ|1|2|C|933
3JAQ|1|2|U|934
3JAQ|1|2|G|935
*
3JAQ|1|2|C|942
3JAQ|1|2|A|943
3JAQ|1|2|U|944
3JAQ|1|2|U|945
3JAQ|1|2|U|946
3JAQ|1|2|G|947

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

eS1

Chain N

uS15

Chain O

uS11

Chain a

eS26