J3_3JAQ_005

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|C|1160
3JAQ|1|2|C|1161
3JAQ|1|2|A|1162
3JAQ|1|2|G|1163
*
3JAQ|1|2|C|1579
3JAQ|1|2|U|1580
3JAQ|1|2|A|1581
3JAQ|1|2|G|1582
3JAQ|1|2|U|1583
3JAQ|1|2|A|1584
3JAQ|1|2|A|1585
*
3JAQ|1|2|U|1607
3JAQ|1|2|G|1608
3JAQ|1|2|A|1609
3JAQ|1|2|U|1610
3JAQ|1|2|U|1611
3JAQ|1|2|A|1612
3JAQ|1|2|C|1613
3JAQ|1|2|G|1614

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain c

eS28

Chain j

eIF2 alpha