J3_3JAQ_010

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUG*UGUC*GAUAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|G|1291
3JAQ|1|2|U|1292
3JAQ|1|2|G|1293
*
3JAQ|1|2|U|1302
3JAQ|1|2|G|1303
3JAQ|1|2|U|1304
3JAQ|1|2|C|1305
*
3JAQ|1|2|G|1317
3JAQ|1|2|A|1318
3JAQ|1|2|U|1319
3JAQ|1|2|A|1320
3JAQ|1|2|A|1321
3JAQ|1|2|C|1322

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

uS2

Chain C

uS5

Chain R

eS17