J3_3JCD_015
3D structure
- PDB id
- 3JCD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 3JCD|1|B|C|12, 3JCD|1|B|U|14, 3JCD|1|B|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCD_015 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.2056
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
3JCD|1|B|G|10
3JCD|1|B|C|11
3JCD|1|B|C|12
3JCD|1|B|G|13
3JCD|1|B|U|14
3JCD|1|B|A|15
3JCD|1|B|G|16
*
3JCD|1|B|C|68
3JCD|1|B|G|69
3JCD|1|B|C|70
*
3JCD|1|B|G|106
3JCD|1|B|G|107
3JCD|1|B|A|108
3JCD|1|B|A|109
3JCD|1|B|C|110
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
Coloring options: