J3_3JCD_034

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCUAAC*GGGGAAUAUUG*CAGC

Length

22 nucleotides

Bulged bases

3JCD|1|a|C|48, 3JCD|1|a|A|50, 3JCD|1|a|A|51, 3JCD|1|a|U|368

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCD|1|a|G|46
3JCD|1|a|C|47
3JCD|1|a|C|48
3JCD|1|a|U|49
3JCD|1|a|A|50
3JCD|1|a|A|51
3JCD|1|a|C|52
*
3JCD|1|a|G|359
3JCD|1|a|G|360
3JCD|1|a|G|361
3JCD|1|a|G|362
3JCD|1|a|A|363
3JCD|1|a|A|364
3JCD|1|a|U|365
3JCD|1|a|A|366
3JCD|1|a|U|367
3JCD|1|a|U|368
3JCD|1|a|G|369
*
3JCD|1|a|C|392
3JCD|1|a|A|393
3JCD|1|a|G|394
3JCD|1|a|C|395

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16