J3_3JCD_035

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGUU*AGCUUGA*UGACG

Length

17 nucleotides

Bulged bases

3JCD|1|a|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCD_035 not in the Motif Atlas

Homologous match to J3_6CZR_060

Geometric discrepancy: 0.1936

The information below is about J3_6CZR_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_72319.1

Basepair signature

cWW-F-F-F-F-tWH-F-F-cWW-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

3JCD|1|a|C|586
3JCD|1|a|G|587
3JCD|1|a|G|588
3JCD|1|a|U|589
3JCD|1|a|U|590
*
3JCD|1|a|A|649
3JCD|1|a|G|650
3JCD|1|a|C|651
3JCD|1|a|U|652
3JCD|1|a|U|653
3JCD|1|a|G|654
3JCD|1|a|A|655
*
3JCD|1|a|U|751
3JCD|1|a|G|752
3JCD|1|a|A|753
3JCD|1|a|C|754
3JCD|1|a|G|755

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain l

30S ribosomal protein S12

Chain o

30S ribosomal protein S15

Chain q

30S ribosomal protein S17