J3_3JCD_042

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CACGGAAGU*AUGUGC*GAACCGUG

Length

23 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCD|1|a|C|999
3JCD|1|a|A|1000
3JCD|1|a|C|1001
3JCD|1|a|G|1002
3JCD|1|a|G|1003
3JCD|1|a|A|1004
3JCD|1|a|A|1005
3JCD|1|a|G|1006
3JCD|1|a|U|1007
*
3JCD|1|a|A|1022
3JCD|1|a|U|1023
3JCD|1|a|G|1024
3JCD|1|a|U|1025
3JCD|1|a|G|1026
3JCD|1|a|C|1027
*
3JCD|1|a|G|1034
3JCD|1|a|A|1035
3JCD|1|a|A|1036
3JCD|1|a|C|1037
3JCD|1|a|C|1038
3JCD|1|a|G|1039
3JCD|1|a|U|1040
3JCD|1|a|G|1041

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14